Oncogenic Processes/Immune Landscape of Cancer

• The Immune Landscape of Cancer. Immunity. Volume 48, Issue 4, p812–830.e14, 17 April 2018
  • iAtlas portal for interactive exploration and visualization

• 6 immune subtypes

  • C1 (wound healing)
  • C2 (IFN-γ dominant)
  • C3 (inflammatory)
  • C4 (lymphocyte depleted)
  • C5 (immunologically quiet)
  • C6 (TGF-β dominant)

Reference:

• The Immune Landscape of Cancer. Immunity. Volume 48, Issue 4, p812–830.e14, 17 April 2018
  • iAtlas portal for interactive exploration and visualization
    • Programs
      • The Cancer Genome Atlas: TCGA
    • Data Repositories
      • NCI Genomic Data Commons
    • PanCancer Atlas Manuscript Pages
      • Overall Landing Page:
      • Immune Study Manuscript Page
    • Organizations
      • Cancer Research Institute
      • Sage Bionetworks
      • Institute for Systems Biology
    • Documentation: The current version of the iAtlas Portal was built in R using code hosted at https://github.com/CRI-iAtlas/shiny-iatlas .