| auxiliary |
2 |
Methylation array auxiliary data in SDF format. These include project-level methylation array QC metrics. |
| bisulfite |
2 + 3 |
DNA methylation VCF and BED files. Includes bisulfite sequence alignments (VCF) and methylation percentages (BED). Subset of tag: meth |
| meth |
1 + 2 + 3 |
Raw methylation array data and methylation alignments (Bisulfite-Seq). Includes raw and normalized array data, QC metrics and methylation beta values. Methylation array data can be found under Data Category: Raw microarray data. |
| qc |
2 |
QC data for microarrays. Available as JPGs (actual photographs of microarray intensities) and PDFs (microarray reports) for CGH array data. Available as XML coordinate files and project-level CSVs that contain aliquot fluorescence conjugation levels. |