• Note of Cancer (TCGA) Data Analysis
  • Introduction
    • Timeline of Genome
  • TCGA Project (2005-2017)
    • DataDownload
    • Code
  • 2018 The Pan-Cancer Atlas @Cell
    • Cell of Origin Patterns
      • Cell-of-Origin
      • GI Adenocarcinomas
      • Gynecologic and Breast Cancers
    • Oncogenic Processes
      • OncogenicProcesses
      • ImmuneLandscape.md
      • Epigenetic
    • Signaling Pathways
      • SignalingPathways
  • 2020 Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium @Nature
  • Machine Learning
    • Oncogenic Dedifferentiatio
    • Pathway Activation
  • Items
    • Analysis of regulation
    • Aneuploidy 非整倍體
    • CNV: Copy Number 單染色體拷貝數
    • Epigenetic
    • Gene Expression
    • Immune Cells
      • Lymphocytes
        • B cell
          • Plasma Cell
          • Memory B Cell
        • T cell
          • Th cell: CD4+ cells
          • Tc cell: CD8+ cells
        • NK Natural Killer cell
      • Granulocytes
        • Neutrophils
        • Eosinophils
        • Basophils
        • Mast Cells
        • Monocyte
          • Dendritic Cells
          • Macrophage
    • Interferons
    • NCBI
    • SNP: single-nucleotide polymorphism
  • Tools
    • TCGA Code Tables
      • BCR Batch Codes
      • Center Codes
      • Data Levels
      • Data Types
      • Platform Codes
      • Portion / Analyte Codes
      • Sample Type Codes
      • TCGA Study Abbreviations
      • Tissue Source Site
      • Tissue Source Site: A-Z Source Site
      • Tissue Source Site: A-Z Study Name
    • TCGA Tag Descriptions
      • Clinical Data
      • Copy Number Variation
      • Gene Expression Data
      • Methylation Data
      • miRNA Data
      • Other Data
    • Infograohic
    • Web TCGA
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Signaling Pathways

Signaling Pathways

  • Flagship Paper

    • Oncogenic Signaling Pathways in The Cancer Genome Atlas
  • Companion Papers

    • Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas
    • Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas
    • Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas
    • Molecular Characterization and Clinical Relevance of Metabolic Expression Subtypes in Human Cancers
    • Integrated Genomic Analysis of the Ubiquitin Pathway across Cancer Types
    • Somatic Mutational Landscape of Splicing Factor Genes and Their Functional Consequences across 33 Cancer Types

Reference:

  • Welcome to the Pan-Cancer Atlas

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