| cov |
1 |
ABI sequence trace files. Only from project TCGA-GBM. |
| coverage |
2 |
Wiggle track files. Synonymous with Data Format: WIG. |
| indel |
2 |
VCF files that only include insertion-deletion mutations. |
| msi |
1 |
Capillary sequencer files associated with microsatellite instability. Available in FSA format or as tab-delimited processed results. |
| snv |
2 |
Simple nucleotide variation files measured with DNA or RNA-Seq. These are available as VCFs or MAFs. This tag does not include VCF and MAF files from copy number variation or bisulfite-seq studies. |
| somatic |
2 |
This tag includes all MAF files, except for those generated with capillary sequencing |
| tr |
1 |
Trace ID-to-sample relationship files in tab-delimited format. Available for TCGA-GBM, OV. |